• Malliavin Calculus for the stochastic Cahn- Hilliard/Allen-Cahn equation with unbounded noise diffusion

      Antonopoulou, Dimitra; Farazakis, Dimitris; Karali, Georgia D.; University of Chester; Foundation for Research and Technology; University of Crete (Elsevier, 2018-05-08)
      The stochastic partial di erential equation analyzed in this work, is motivated by a simplified mesoscopic physical model for phase separation. It describes pattern formation due to adsorption and desorption mechanisms involved in surface processes, in the presence of a stochastic driving force. This equation is a combination of Cahn-Hilliard and Allen-Cahn type operators with a multiplicative, white, space-time noise of unbounded di usion. We apply Malliavin calculus, in order to investigate the existence of a density for the stochastic solution u. In dimension one, according to the regularity result in [5], u admits continuous paths a.s. Using this property, and inspired by a method proposed in [8], we construct a modi ed approximating sequence for u, which properly treats the new second order Allen-Cahn operator. Under a localization argument, we prove that the Malliavin derivative of u exists locally, and that the law of u is absolutely continuous, establishing thus that a density exists.
    • Mathematical modelling and numerical simulations in nerve conduction

      Ford, Neville J.; Lima, Pedro M.; Lumb, Patricia M.; University of Chester ; University of Lisbon / University of Linz ; University of Chester (Scitepress, 2015-01-12)
      In the present work we analyse a functionaldifferential equation, sometimes known as the discrete FitzHugh-Nagumo equation, arising in nerve conduction theory.
    • Mathematical models of DNA methylation dynamics: Implications for health and ageing

      Zagkos, Loukas; Mc Auley, Mark T.; Roberts, Jason A.; Kavallaris, Nikos I.; University of Chester (Elsevier, 2018-11-15)
      DNA methylation status is a key epigenetic process which has been intimately associated with gene regulation. In recent years growing evidence has associated DNA methylation status with a variety of diseases including cancer, Alzheimers disease and cardiovascular disease. Moreover, changes to DNA methylation have also recently been implicated in the ageing process. The factors which underpin DNA methylation are complex, and remain to be fully elucidated. Over the years mathematical modelling has helped to shed light on the dynamics of this important molecular system. Although the existing models have contributed significantly to our overall understanding of DNA methylation, they fall-short of fully capturing the dynamics of this process. In this paper we develop a linear and nonlinear model which captures more fully the dynamics of the key intracellular events which characterise DNA methylation. In particular the outcomes of our linear model result in gene promoter specific methylation levels which are more biologically plausible than those revealed by previous mathematical models. In addition, our non-linear model predicts DNA methylation promoter bistability which is commonly observed experimentally. The findings from our models have implications for our current understanding of how changes to the dynamics which underpin DNA methylation affect ageing and health.
    • Mixed-type functional differential equations: A numerical approach

      Ford, Neville J.; Lumb, Patricia M.; University of Chester (Elsevier, 2007-10-29)
      This preprint discusses mixed-type functional equations.
    • Mixed-type functional differential equations: A numerical approach (extended version)

      Ford, Neville J.; Lumb, Patricia M.; University of Chester (University of Chester, 2007)
    • A Modified Bordered Construction for Self-Dual Codes from Group Rings

      Kaya, Abidin; Tylyshchak, Alexander; Yildiz, Bahattin; Gildea, Joe; University of Chester; Sampoerna University; Uzhgorod State University; Northern Arizona University (Jacodesmath Institute, 2020-05-07)
      We describe a bordered construction for self-dual codes coming from group rings. We apply the constructions coming from the cyclic and dihedral groups over several alphabets to obtain extremal binary self-dual codes of various lengths. In particular we find a new extremal binary self-dual code of length 78.
    • Modified Quadratic Residue Constructions and New Exermal Binary Self-Dual Codes of Lengths 64, 66 and 68

      Gildea, Joe; Hamilton, Holly; Kaya, Abidin; Yildiz, Bahattin; University of Chester; University of Chester; Sampoerna University; Northern Arizona University (Elsevier, 2020-02-10)
      In this work we consider modified versions of quadratic double circulant and quadratic bordered double circulant constructions over the binary field and the rings F2 +uF2 and F4 +uF4 for different prime values of p. Using these constructions with extensions and neighbors we are able to construct a number of extremal binary self-dual codes of different lengths with new parameters in their weight enumerators. In particular we construct 2 new codes of length 64, 4 new codes of length 66 and 14 new codes of length 68. The binary generator matrices of the new codes are available online at [8].
    • Motion of a droplet for the Stochastic mass conserving Allen-Cahn equation

      Antonopoulou, Dimitra; Bates, Peter W.; Bloemker, Dirk; Karali, Georgia D.; University of Chester (SIAM, 2016-02-16)
      We study the stochastic mass-conserving Allen-Cahn equation posed on a smoothly bounded domain of R2 with additive, spatially smooth, space-time noise. This equation describes the stochastic motion of a small almost semicircular droplet attached to domain's boundary and moving towards a point of locally maximum curvature. We apply It^o calculus to derive the stochastic dynamics of the center of the droplet by utilizing the approximately invariant manifold introduced by Alikakos, Chen and Fusco [2] for the deterministic problem. In the stochastic case depending on the scaling, the motion is driven by the change in the curvature of the boundary and the stochastic forcing. Moreover, under the assumption of a su ciently small noise strength, we establish stochastic stability of a neighborhood of the manifold of boundary droplet states in the L2- and H1-norms, which means that with overwhelming probability the solution stays close to the manifold for very long time-scales.
    • Multi-order fractional differential equations and their numerical solution

      Diethelm, Kai; Ford, Neville J.; Technische Universität Braunschweig ; University College Chester (Elsevier, 2004-07-15)
      This article considers the numerical solution of (possibly nonlinear) fractional differential equations of the form y(α)(t)=f(t,y(t),y(β1)(t),y(β2)(t),…,y(βn)(t)) with α>βn>βn−1>>β1 and α−βn1, βj−βj−11, 0
    • A multi-species chemotaxis system: Lyapunov functionals, duality, critical mass

      Kavallaris, Nikos I.; Ricciardi, Tonia; Zecca, Gabriela; University of Chester; Universita` di Napoli Federico II (Cambridge University Press, 2017-10-09)
      We introduce a multi-species chemotaxis type system admitting an arbitrarily large number of population species, all of which are attracted vs.\ repelled by a single chemical substance. The production vs.\ destruction rates of the chemotactic substance by the species is described by a probability measure. For such a model we investigate the variational structures, in particular we prove the existence of Lyapunov functionals, we establish duality properties as well as a logarithmic Hardy-Littlewood-Sobolev type inequality for the associated free energy. The latter inequality provides the optimal critical value for the conserved total population mass.
    • Neutral delay differential equations in the modelling of cell growth

      Baker, Christopher T. H.; Bocharov, Gennady; Rihan, F. A. R.; University of Chester (University of Chester, 2008)
      In this contribution, we indicate (and illustrate by example) roles that may be played by neutral delay differential equations in modelling of certain cell growth phenomena that display a time lag in reacting to events. We explore, in this connection, questions involving the sensitivity analysis of models and related mathematical theory; we provide some associated numerical results.
    • New binary self-dual codes via a generalization of the four circulant construction

      Gildea, Joe; Kaya, Abidin; Yildiz, Bahattin; University of Chester ; Sampoerna University ; Northern Arizona University (Croatian Mathematical Society, 2020-05-31)
      In this work, we generalize the four circulant construction for self-dual codes. By applying the constructions over the alphabets $\mathbb{F}_2$, $\mathbb{F}_2+u\mathbb{F}_2$, $\mathbb{F}_4+u\mathbb{F}_4$, we were able to obtain extremal binary self-dual codes of lengths 40, 64 including new extremal binary self-dual codes of length 68. More precisely, 43 new extremal binary self-dual codes of length 68, with rare new parameters have been constructed.
    • New Extremal binary self-dual codes of length 68 from generalized neighbors

      Gildea, Joe; Kaya, Abidin; Korban, Adrian; Yildiz, Bahattin; University of Chester; Sampoerna University; Northern Arizona University
      In this work, we use the concept of distance between self-dual codes, which generalizes the concept of a neighbor for self-dual codes. Using the $k$-neighbors, we are able to construct extremal binary self-dual codes of length 68 with new weight enumerators. We construct 143 extremal binary self-dual codes of length 68 with new weight enumerators including 42 codes with $\gamma=8$ in their $W_{68,2}$ and 40 with $\gamma=9$ in their $W_{68,2}$. These examples are the first in the literature for these $\gamma$ values. This completes the theoretical list of possible values for $\gamma$ in $W_{68,2}$.
    • New Extremal Self-Dual Binary Codes of Length 68 via Composite Construction, F2 + uF2 Lifts, Extensions and Neighbors

      Dougherty, Steven; Gildea, Joe; Korban, Adrian; Kaya, Abidin; University of Scranton; University of Chester; University of Chester; Sampoerna Academy; (Inderscience, 2020-02-29)
      We describe a composite construction from group rings where the groups have orders 16 and 8. This construction is then applied to find the extremal binary self-dual codes with parameters [32, 16, 8] or [32, 16, 6]. We also extend this composite construction by expanding the search field which enables us to find more extremal binary self-dual codes with the above parameters and with different orders of automorphism groups. These codes are then lifted to F2 + uF2, to obtain extremal binary images of codes of length 64. Finally, we use the extension method and neighbor construction to obtain new extremal binary self-dual codes of length 68. As a result, we obtain 28 new codes of length 68 which were not known in the literature before.
    • New Self-Dual and Formally Self-Dual Codes from Group Ring Constructions

      Dougherty, Steven; Gildea, Joe; Kaya, Abidin; Yildiz, Bahattin; University of Scranton; University of Chester; Sampoerna Academy; University of Chester; Northern Arizona University (American Institute of Mathematical Sciences, 2019-08-31)
      In this work, we study construction methods for self-dual and formally self-dual codes from group rings, arising from the cyclic group, the dihedral group, the dicyclic group and the semi-dihedral group. Using these constructions over the rings $_F2 +uF_2$ and $F_4 + uF_4$, we obtain 9 new extremal binary self-dual codes of length 68 and 25 even formally self-dual codes with parameters [72,36,14].
    • New Self-Dual Codes of Length 68 from a 2 × 2 Block Matrix Construction and Group Rings

      Bortos, Maria; Gildea, Joe; Kaya, Abidin; Korban, Adrian; Tylyshchak, Alexander; Uzhgorod National University, University of Chester, Harmony School of Technology, University of Chester, Uzhgorod National University
      Many generator matrices for constructing extremal binary self-dual codes of different lengths have the form G = (In | A); where In is the n x n identity matrix and A is the n x n matrix fully determined by the first row. In this work, we define a generator matrix in which A is a block matrix, where the blocks come from group rings and also, A is not fully determined by the elements appearing in the first row. By applying our construction over F2 +uF2 and by employing the extension method for codes, we were able to construct new extremal binary self-dual codes of length 68. Additionally, by employing a generalised neighbour method to the codes obtained, we were able to con- struct many new binary self-dual [68,34,12]-codes with the rare parameters $\gamma = 7$; $8$ and $9$ in $W_{68,2}$: In particular, we find 92 new binary self-dual [68,34,12]-codes.
    • Noise induced changes to dynamic behaviour of stochastic delay differential equations

      Ford, Neville J.; Norton, Stewart J. (University of Liverpool (University of Chester)University of Chester, 2008-02)
      This thesis is concerned with changes in the behaviour of solutions to parameter-dependent stochastic delay differential equations.
    • Noise-induced changes to the behaviour of semi-implicit Euler methods for stochastic delay differential equations undergoing bifurcation

      Ford, Neville J.; Norton, Stewart J.; University of Chester (Elsevier, 2009-07-15)
      This article discusses estimating parameter values at which bifurcations occur in stochastic delay differential equations. After a brief review of bifurcation, we employ a numerical approach and consider how bifurcation values are influenced by the choice of numerical scheme and the step length and by the level of white noise present in the equation. In this paper we provide a formulaic relationship between the estimated bifurcation value, the level of noise, the choice of numerical scheme and the step length. We are able to show that in the presence of noise there may be some loss of order in the accuracy of the approximation to the true bifurcation value compared to the use of the same approach in the absence of noise.
    • Noise-induced changes to the bifurcation behaviour of semi-implicit Euler methods for stochastic delay differential equations

      Ford, Neville J.; Norton, Stewart J.; University of Chester (University of Chester, 2007)
      We are concerned with estimating parameter values at which bifurcations occur in stochastic delay differential equations. After a brief review of bifurcation, we employ a numerical approach and consider how bifurcation values are influenced by the choice of numerical scheme and the step length and by the level of white noise present in the equation. In this paper we provide a formulaic relationship between the estimated bifurcation value, the level of noise, the choice of numerical scheme and the step length. We are able to show that in the presence of noise there maybe some loss of order in the accuracy of the approximation to the true bifurcation value compared to the use of the same approach in the absence of noise.
    • Non-Local Partial Differential Equations for Engineering and Biology: Mathematical Modeling and Analysis

      Kavallaris, Nikos I.; Suzuki, Takashi; University of Chester; Osaka University (Springer, 2017-12-14)
      This book presents new developments in non-local mathematical modeling and mathematical analysis on the behavior of solutions with novel technical tools. Theoretical backgrounds in mechanics, thermo-dynamics, game theory, and theoretical biology are examined in details. It starts off with a review and summary of the basic ideas of mathematical modeling frequently used in the sciences and engineering. The authors then employ a number of models in bio-science and material science to demonstrate applications, and provide recent advanced studies, both on deterministic non-local partial differential equations and on some of their stochastic counterparts used in engineering. Mathematical models applied in engineering, chemistry, and biology are subject to conservation laws. For instance, decrease or increase in thermodynamic quantities and non-local partial differential equations, associated with the conserved physical quantities as parameters. These present novel mathematical objects are engaged with rich mathematical structures, in accordance with the interactions between species or individuals, self-organization, pattern formation, hysteresis. These models are based on various laws of physics, such as mechanics of continuum, electro-magnetic theory, and thermodynamics. This is why many areas of mathematics, calculus of variation, dynamical systems, integrable systems, blow-up analysis, and energy methods are indispensable in understanding and analyzing these phenomena. This book aims for researchers and upper grades students in mathematics, engineering, physics, economics, and biology.